R interface (rBExIS)

The package that you need:

  • install.packages(“httr”)
  • install.packages(“XML”)
  • install.packages(“jsonlite”)
  • install_github(“BEXIS2/rBExIS”, subdir = “rBExIS”)

bexis.options(base_url = “https://jexis.uni-jena.de”)
token_id<-”XXXXXXXXXX” •bexis.options(token = “token_id”)

#get list of all dataset ids
bexis_dataset_ids <- bexis.get.datasets()

#get data from bexis from dataset with id = xy
bexis_data12 <- bexis.get.dataset_by(id = 12)

#It can also access Metadata & datastructure

! The NA value in the database will be read as the maximum double value 1.797693e+307 in R if you use rBEXIS package.